Yazar "AGÜ, Mühendislik Fakültesi, Bilgisayar Mühendisliği Bölümü" için Yaşam ve Doğa Bilimleri Fakültesi listeleme
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ConVarT: A search engine for matching human genetic variants with variants from non-human species
Pir, Mustafa; Bilgin, Halil I.; Sayıcı, Ahmet; Coşkun, Fatih; Torun, Furkan M; Zhao, Pei; Kang, Yahong; Çevik, Sebiha; Kaplan, Oktay İsmail (Oxford University Press, 2022)The availability of genetic variants, together with phenotypic annotations from model organisms, facilitates comparing these variants with equivalent variants in humans. However, existing databases and search tools do not ... -
Deep learning based semantic segmentation and quantification for MRD biochip images
Çelebi, Fatma; Tasdemir, Kasim; Icoz, Kutay (ELSEVIER SCI LTD, 2022)Microfluidic platforms offer prominent advantages for the early detection of cancer and monitoring the patient response to therapy. Numerous microfluidic platforms have been developed for capturing and quantifying the tumor ... -
Enlightening the molecular mechanisms of type 2 diabetes with a novel pathway clustering and pathway subnetwork approach
Bakır Güngör, Burcu; Ünlü, Yazıcı, Miray; Göy, Gökhan; Temiz, Mustafa (TUBITAK, 2022)Type 2 diabetes mellitus (T2D) constitutes 90% of the diabetes cases, and it is a complex multifactorial disease. In the last decade, genome-wide association studies (GWASs) for T2D successfully pinpointed the genetic ... -
Identifying Taxonomic Biomarkers of Colorectal Cancer in Human Intestinal Microbiota Using Multiple Feature Selection Methods
Jabeer, Amhar; Kocak, Aysegul; Akkas, Huseyin; Yenisert, Ferhan; Nalbantoglu, Ozkan Ufuk; Yousef, Malik; Bakir Gungor, Burcu (Institute of Electrical and Electronics Engineers Inc., 2022)A variety of bacterial species called gut microbiota work together to maintain a steady intestinal environment. The gastrointestinal tract contains tremendous amount of different species including archaea, bacteria, fungi, ... -
MSABrowser: dynamic and fast visualization of sequence alignments, variations and annotations
Torun, Furkan M.; Bilgin, Halil İbrahim; Kaplan, Oktay I. (Oxford University Press, 2021)Sequence alignment is an excellent way to visualize the similarities and differences between DNA, RNA or protein sequences, yet it is currently difficult to jointly view sequence alignment data with genetic variations, ...