• Integrated querying and version control of context-specific biological networks 

  Cowman, Tyler; Coskun, Mustafa; Grama, Ananth; Koyuturk, Mehmet (OXFORD UNIV PRESS, GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND, 2020)

  Motivation: Biomolecular data stored in public databases is increasingly specialized to organisms, context/pathology and tissue type, potentially resulting in significant overhead for analyses. These networks are often ...

• Strain rate and hydrogen effects on crack growth from a notch in a Fe-high-Mn steel containing 1.1 wt% solute carbon 

  Najam, Hina; Koyama, Motomichi; Bal, Burak; Akiyama, Eiji; Tsuzaki, Kaneaki (PERGAMON-ELSEVIER SCIENCE LTD, THE BOULEVARD, LANGFORD LANE, KIDLINGTON, OXFORD OX5 1GB, ENGLAND, 2020)

  Effects of strain rate and hydrogen on crack propagation from a notch were investigated using a Fe-33Mn-1.1C steel by tension tests conducted at a cross head displacement speeds of 10(-2) and 10(-4) mm/s. Decreasing cross ...

• On the existence of positive solutions for the second-order boundary value problem 

  Dogan, Abdulkadir (Elsevier Ltd, 2015)

  bstract This paper is concerned with the existence of positive solutions to a second order boundary value problem. By imposing growth conditions on f and using a generalization of the Leggett-Williams fixed point theorem, ...

• Reply to Stoimenis et al 

  Bakir Güngör, Burcu; Remmers, Elaine F.; Meguro, Akira; Mizuki, Nobuhisa; Kästner, Daniel L.; Gul, Ahmet; Sezerman, Ugur (Nature Publishing Group, 2015)

  [Özet Yok]

• A multiobjective, lion mating optimization inspired routing protocol for wireless body area sensor network based healthcare applications 

  Faheem, Muhammad; Aslam Butt, Rizwan; Raza, B.; Alquhayz, Hani; Abbas, Muhammad Zahid; Ngadi, M. A.; Güngör, Vehbi Çağrı (MDPI AG, 2019)

  The importance of body area sensor networks (BASNs) is increasing day by day because of their increasing use in Internet of things (IoT)-enabled healthcare application services. They help humans in improving their quality ...

• Strain rate and hydrogen effects on crack growth from a notch in a Fe-high-Mn steel containing 1.1 wt% solute carbon 

  Najam, Hina; Koyama, Motomichi; Bal, Burak; Akiyama, Eiji; Tsuzaki, Kaneaki (Elsevier Ltd, 2020)

  Effects of strain rate and hydrogen on crack propagation from a notch were investigated using a Fe-33Mn-1.1C steel by tension tests conducted at a cross head displacement speeds of 10-2 and 10-4 mm/s. Decreasing cross head ...

• HomSI: a homozygous stretch identifier from next-generation sequencing data 

  Gormez, Zeliha; Bakir-Gungor, Burcu; Sagiroglu, Mahmut Samil (OXFORD UNIV PRESS, GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND, 2014)

  In consanguineous families, as a result of inheriting the same genomic segments through both parents, the individuals have stretches of their genomes that are homozygous. This situation leads to the prevalence of recessive ...

• Nanosecond colloidal quantum dot lasers for sensing 

  Mutlugun, Evren; Guilhabert, B.; Foucher, Caroline; Haughey, Anne-Marie; Gao, Yuan; Herrnsdorf, Johannes; Sun, Han-Dong; Demir, Hilmi Volkan; Dawson, Martin; Laurand, Nicolas (OPTICAL SOC AMER, 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA, 2014)

  Low-threshold, gain switched colloidal quantum dot (CQD) distributed-feedback lasers operating in the nanosecond regime are reported and proposed for sensing applications for the first time to the authors' knowledge. The ...

• PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data 

  Bakir-Gungor, Burcu; Egemen, Ece; Sezerman, Osman Ugur (OXFORD UNIV PRESS, GREAT CLARENDON ST, OXFORD OX2 6DP, ENGLAND, 2014)

  Genome-wide association studies (GWAS) have revolutionized the search for the variants underlying human complex diseases. However, in a typical GWAS, only a minority of the single-nucleotide polymorphisms (SNPs) with the ...

• Colloidal Quantum Dot Light-Emitting Diodes Employing Phosphorescent Small Organic Molecules as Efficient Exciton Harvesters 

  Mutlugun, Evren; Guzelturk, Burak; Abiyasa, Agus Putu; Gao, Yuan; Sun, Xiao Wei; Demir, Hilmi Volkan (AMER CHEMICAL SOC, 1155 16TH ST, NW, WASHINGTON, DC 20036 USA, 2014)

  Nonradiative energy transfer (NRET) is an alternative excitation mechanism in colloidal quantum dot (QD) based electroluminescent devices (QLEDs). Here, we develop hybrid highly spectrally pure QLEDs that facilitate energy ...

• Multiple slow waves and relevant transverse transmission and confinement in chirped photonic crystals 

  Serebryannikov, Andriy E.; Cakmak, A. Ozgur; Colak, Evrim; Caglayan, Humeyra; Kurt, Hamza; Ozbay, Ekmel (OPTICAL SOC AMER, 2010 MASSACHUSETTS AVE NW, WASHINGTON, DC 20036 USA, 2014)

  The dispersion properties of rod-type chirped photonic crystals (PhCs) and non-channeled transmission in the direction of the variation of structural parameters from one cell of such a PhC to another are studied. Two types ...

• Wireless Measurement of Elastic and Plastic Deformation by a Metamaterial-Based Sensor 

  Ozbey, Burak; Demir, Hilmi Volkan; Kurc, Ozgur; Erturk, Vakur B.; Altintas, Ayhan (MDPI, ST ALBAN-ANLAGE 66, CH-4052 BASEL, SWITZERLAND, 2014)

  We report remote strain and displacement measurement during elastic and plastic deformation using a metamaterial-based wireless and passive sensor. The sensor is made of a comb-like nested split ring resonator (NSRR) probe ...

• Clinical probe utilizing surface enhanced Raman scattering 

  Kim, Jeonghwan; Hah, Dooyoung; Daniels-Race, Theda; Feldman, Martin (A V S AMER INST PHYSICS, STE 1 NO 1, 2 HUNTINGTON QUADRANGLE, MELVILLE, NY 11747-4502 USA, 2014)

  Conventional Raman scattering is a well-known technique for detecting and identifying complex molecular samples. In surface enhanced Raman scattering, a nanorough metallic surface close to the sample enormously enhances ...

• One-pot conjugated linoleic acid production from castor oil by Rhizopus oryzae lipase and resting cells of Lactobacillus plantarum 

  Khaskheli, Abid Ali; Talpur, Farah Naz; Aydin, Aysun Cebeci; Jawaid, Sana; Surhio, Muhammad Ali; Afridi, Hassan Imran (TAYLOR & FRANCIS LTD, 2-4 PARK SQUARE, MILTON PARK, ABINGDON OR14 4RN, OXON, ENGLAND, 2017)

  Conjugated linoleic acid (CLA) has attracted as novel type of fatty acids having unusual health-promoting properties such as anticarcinogenic and antiobesitic effects. The present work employed castor oil as substrate for ...

• Analysis of coronary angiography related psychophysiological responses 

  Okkesim, Sukru; Kara, Sadik; Kaya, Mehmet G.; Asyali, Musa H. (BMC, CAMPUS, 4 CRINAN ST, LONDON N1 9XW, ENGLAND, 2011)

  Background: Coronary angiography is an important tool in diagnosis of cardiovascular diseases. However, it is the administration is relatively stressful and emotionally traumatic for the subjects. The aim of this study is ...

• Magnetic micro/nanoparticle flocculation-based signal amplification for biosensing 

  Mzava, Omary; Tas, Zehra; Icoz, Kutay (DOVE MEDICAL PRESS LTD, PO BOX 300-008, ALBANY, AUCKLAND 0752, NEW ZEALAND, 2006)

  We report a time and cost efficient signal amplification method for biosensors employing magnetic particles. In this method, magnetic particles in an applied external magnetic field form magnetic dipoles, interact with ...

• A molecular and biophysical comparison of macromolecular changes in imatinib-sensitive and imatinib-resistant K562 cells exposed to ponatinib 

  Yandim, Melis Kartal; Ceylan, Cagatay; Elmas, Efe; Baran, Yusuf (SAGE PUBLICATIONS LTD, 1 OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y 1SP, ENGLAND, 2016)

  Chronic myeloid leukemia (CML) is a type of hematological malignancy that is characterized by the generation of Philadelphia chromosome encoding BCR/ABL oncoprotein. Tyrosine kinase inhibitors (TKIs), imatinib, nilotinib, ...

• Apoptotic effects of non-edible parts of Punica granatum on human multiple myeloma cells 

  Kiraz, Yagmur; Neergheen-Bhujun, Vidushi S.; Rummun, Nawraj; Baran, Yusuf (SAGE PUBLICATIONS LTD, 1 OLIVERS YARD, 55 CITY ROAD, LONDON EC1Y 1SP, ENGLAND, 2016)

  Multiple myeloma is of great concern since existing therapies are unable to cure this clinical condition. Alternative therapeutic approaches are mandatory, and the use of plant extracts is considered interesting. Punica ...

• A uniformly valid approximation algorithm for nonlinear ordinary singular perturbation problems with boundary layer solutions 

  Cengizci, Suleyman; Atay, Mehmet Tarik; Eryilmaz, Aytekin (SPRINGER INTERNATIONAL PUBLISHING AG, GEWERBESTRASSE 11, CHAM, CH-6330, SWITZERLAND, 2016)

  This paper is concerned with two-point boundary value problems for singularly perturbed nonlinear ordinary differential equations. The case when the solution only has one boundary layer is examined. An efficient method so ...

• Analysis of the in vitro nanoparticle-cell interactions via a smoothing-splines mixed-effects model 

  Dogruoz, Elifnur; Dayanik, Savas; Budak, Gurer; Sabuncuoglu, Ihsan (TAYLOR & FRANCIS LTD, 2-4 PARK SQUARE, MILTON PARK, ABINGDON OR14 4RN, OXON, ENGLAND, 2016)

  A mixed-effects statistical model has been developed to understand the nanoparticle (NP)-cell interactions and predict the rate of cellular uptake of NPs. NP-cell interactions are crucial for targeted drug delivery systems, ...

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